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GrainGenes Probe Report: HORVU.MOREX.r2.1HG0077900

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.1HG0077900
Locus	HORVU.MOREX.r2.1HG0077900.1
URL	Gene Ontology GO:0000448 [ Show all 25 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 27 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Heat shock family protein GO:0000448; biological_process; cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0003676; molecular_function; nucleic acid binding GO:0004518; molecular_function; nuclease activity GO:0004527; molecular_function; exonuclease activity GO:0004534; molecular_function; 5'-3' exoribonuclease activity GO:0005634; cellular_component; nucleus GO:0006139; biological_process; nucleobase-containing compound metabolic process GO:0006351; biological_process; transcription, DNA-templated GO:0006353; biological_process; DNA-templated transcription, termination GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0006364; biological_process; rRNA processing GO:0006397; biological_process; mRNA processing GO:0008270; molecular_function; zinc ion binding GO:0016787; molecular_function; hydrolase activity GO:0019843; molecular_function; rRNA binding GO:0030846; biological_process; termination of RNA polymerase II transcription, poly(A)-coupled GO:0030847; biological_process; termination of RNA polymerase II transcription, exosome-dependent GO:0034244; biological_process; negative regulation of transcription elongation from RNA polymerase II promoter GO:0034428; biological_process; nuclear-transcribed mRNA catabolic process, exonucleolytic, 5'-3' GO:0043144; biological_process; snoRNA processing GO:0046872; molecular_function; metal ion binding GO:0071028; biological_process; nuclear mRNA surveillance GO:0071035; biological_process; nuclear polyadenylation-dependent rRNA catabolic process GO:0090503; biological_process; RNA phosphodiester bond hydrolysis, exonucleolytic GO:1901408; biological_process; negative regulation of phosphorylation of RNA polymerase II C-terminal domain
Type	Genomic
Sequence	HORVU.MOREX.r2.1HG0077900.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)