Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.1HG0071930

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.1HG0071930
Locus	HORVU.MOREX.r2.1HG0071930.1
URL	Gene Ontology GO:0050880 [ Show all 47 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 50 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: UBQ, helicase-c and DEAD-like helicase domain-containing protein GO:0097746; biological_process; regulation of blood vessel diameter The GO term GO:0050880 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0097746 GO:0000166; molecular_function; nucleotide binding GO:0000287; molecular_function; magnesium ion binding GO:0003824; molecular_function; catalytic activity GO:0004357; molecular_function; glutamate-cysteine ligase activity GO:0005524; molecular_function; ATP binding GO:0005829; cellular_component; cytosol GO:0006534; biological_process; cysteine metabolic process GO:0006536; biological_process; glutamate metabolic process GO:0006749; biological_process; glutathione metabolic process GO:0006750; biological_process; glutathione biosynthetic process GO:0006979; biological_process; response to oxidative stress GO:0007568; biological_process; aging GO:0007584; biological_process; response to nutrient GO:0008637; biological_process; apoptotic mitochondrial changes GO:0009408; biological_process; response to heat GO:0009410; biological_process; response to xenobiotic stimulus GO:0009725; biological_process; response to hormone GO:0014823; biological_process; response to activity GO:0016595; molecular_function; glutamate binding GO:0016874; molecular_function; ligase activity GO:0017109; cellular_component; glutamate-cysteine ligase complex GO:0019852; biological_process; L-ascorbic acid metabolic process GO:0031397; biological_process; negative regulation of protein ubiquitination GO:0032436; biological_process; positive regulation of proteasomal ubiquitin-dependent protein catabolic process GO:0032869; biological_process; cellular response to insulin stimulus GO:0035729; biological_process; cellular response to hepatocyte growth factor stimulus GO:0043066; biological_process; negative regulation of apoptotic process GO:0043524; biological_process; negative regulation of neuron apoptotic process GO:0043531; molecular_function; ADP binding GO:0044344; biological_process; cellular response to fibroblast growth factor stimulus GO:0044752; biological_process; response to human chorionic gonadotropin GO:0045454; biological_process; cell redox homeostasis GO:0045892; biological_process; negative regulation of transcription, DNA-templated GO:0046685; biological_process; response to arsenic-containing substance GO:0046686; biological_process; response to cadmium ion GO:0046982; molecular_function; protein heterodimerization activity GO:0050662; molecular_function; coenzyme binding GO:0051409; biological_process; response to nitrosative stress GO:0051900; biological_process; regulation of mitochondrial depolarization GO:0070555; biological_process; response to interleukin-1 GO:0071260; biological_process; cellular response to mechanical stimulus GO:0071333; biological_process; cellular response to glucose stimulus GO:0071372; biological_process; cellular response to follicle-stimulating hormone stimulus GO:0097069; biological_process; cellular response to thyroxine stimulus GO:2000490; biological_process; negative regulation of hepatic stellate cell activation GO:2001237; biological_process; negative regulation of extrinsic apoptotic signaling pathway
Type	Genomic
Sequence	HORVU.MOREX.r2.1HG0071930.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)