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GrainGenes Probe Report: HORVU.MOREX.r2.1HG0047650

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.1HG0047650
Locus	HORVU.MOREX.r2.1HG0047650.1
URL	Gene Ontology GO:0000082 [ Show all 56 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 58 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: CW-type Zinc Finger family protein, expressed GO:0000082; biological_process; G1/S transition of mitotic cell cycle GO:0001975; biological_process; response to amphetamine GO:0004721; molecular_function; phosphoprotein phosphatase activity GO:0004722; molecular_function; protein serine/threonine phosphatase activity GO:0004723; molecular_function; calcium-dependent protein serine/threonine phosphatase activity GO:0005515; molecular_function; protein binding GO:0005516; molecular_function; calmodulin binding GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0005737; cellular_component; cytoplasm GO:0005739; cellular_component; mitochondrion GO:0005829; cellular_component; cytosol GO:0005886; cellular_component; plasma membrane GO:0005955; cellular_component; calcineurin complex GO:0006470; biological_process; protein dephosphorylation GO:0006606; biological_process; protein import into nucleus GO:0006816; biological_process; calcium ion transport GO:0008144; molecular_function; drug binding GO:0009898; cellular_component; cytoplasmic side of plasma membrane GO:0010613; biological_process; positive regulation of cardiac muscle hypertrophy GO:0010628; biological_process; positive regulation of gene expression GO:0010629; biological_process; negative regulation of gene expression GO:0014883; biological_process; transition between fast and slow fiber GO:0014898; biological_process; cardiac muscle hypertrophy in response to stress GO:0016018; molecular_function; cyclosporin A binding GO:0016020; cellular_component; membrane GO:0016311; biological_process; dephosphorylation GO:0016787; molecular_function; hydrolase activity GO:0019722; biological_process; calcium-mediated signaling GO:0019899; molecular_function; enzyme binding GO:0030018; cellular_component; Z disc GO:0033173; biological_process; calcineurin-NFAT signaling cascade GO:0033192; molecular_function; calmodulin-dependent protein phosphatase activity GO:0033555; biological_process; multicellular organismal response to stress GO:0035562; biological_process; negative regulation of chromatin binding GO:0035690; biological_process; cellular response to drug GO:0042383; cellular_component; sarcolemma GO:0043197; cellular_component; dendritic spine GO:0045807; biological_process; positive regulation of endocytosis GO:0045944; biological_process; positive regulation of transcription by RNA polymerase II GO:0045955; biological_process; negative regulation of calcium ion-dependent exocytosis GO:0046676; biological_process; negative regulation of insulin secretion GO:0046872; molecular_function; metal ion binding GO:0046982; molecular_function; protein heterodimerization activity GO:0046983; molecular_function; protein dimerization activity GO:0048741; biological_process; skeletal muscle fiber development GO:0050774; biological_process; negative regulation of dendrite morphogenesis GO:0050804; biological_process; modulation of chemical synaptic transmission GO:0051091; biological_process; positive regulation of DNA-binding transcription factor activity GO:0051592; biological_process; response to calcium ion GO:0060079; biological_process; excitatory postsynaptic potential GO:0070886; biological_process; positive regulation of calcineurin-NFAT signaling cascade GO:0071333; biological_process; cellular response to glucose stimulus GO:1903244; biological_process; positive regulation of cardiac muscle hypertrophy in response to stress GO:1903799; biological_process; negative regulation of production of miRNAs involved in gene silencing by miRNA GO:1905205; biological_process; positive regulation of connective tissue replacement
Type	Genomic
Sequence	HORVU.MOREX.r2.1HG0047650.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)