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GrainGenes Probe Report: HORVU.MOREX.r2.1HG0021750

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.1HG0021750
Locus	HORVU.MOREX.r2.1HG0021750.1
URL	Gene Ontology GO:1902368 [ Show all 37 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 41 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Histidine kinase GO:0140276; biological_process; pericentric heterochromatin maintenance The GO term GO:1902368 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0140276 GO:0031508; biological_process; pericentric heterochromatin assembly The GO term GO:1990141 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0031508 GO:0000122; biological_process; negative regulation of transcription by RNA polymerase II GO:0000183; biological_process; chromatin silencing at rDNA GO:0000781; cellular_component; chromosome, telomeric region GO:0003690; molecular_function; double-stranded DNA binding GO:0003697; molecular_function; single-stranded DNA binding GO:0003727; molecular_function; single-stranded RNA binding GO:0005515; molecular_function; protein binding GO:0005634; cellular_component; nucleus GO:0005694; cellular_component; chromosome GO:0005737; cellular_component; cytoplasm GO:0005816; cellular_component; spindle pole body GO:0005856; cellular_component; cytoskeleton GO:0006325; biological_process; chromatin organization GO:0006338; biological_process; chromatin remodeling GO:0006348; biological_process; chromatin silencing at telomere GO:0007535; biological_process; donor selection GO:0008168; molecular_function; methyltransferase activity GO:0008270; molecular_function; zinc ion binding GO:0016740; molecular_function; transferase activity GO:0018024; molecular_function; histone-lysine N-methyltransferase activity GO:0030466; biological_process; chromatin silencing at silent mating-type cassette GO:0030702; biological_process; chromatin silencing at centromere GO:0031618; cellular_component; nuclear pericentric heterochromatin GO:0031934; cellular_component; mating-type region heterochromatin GO:0032259; biological_process; methylation GO:0034507; cellular_component; chromosome, centromeric outer repeat region GO:0034613; biological_process; cellular protein localization GO:0034968; biological_process; histone lysine methylation GO:0035064; molecular_function; methylated histone binding GO:0043494; cellular_component; CLRC complex GO:0045141; biological_process; meiotic telomere clustering GO:0046872; molecular_function; metal ion binding GO:0046974; molecular_function; histone methyltransferase activity (H3-K9 specific) GO:0051567; biological_process; histone H3-K9 methylation GO:1990707; cellular_component; nuclear subtelomeric heterochromatin
Type	Genomic
Sequence	HORVU.MOREX.r2.1HG0021750.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)