Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: scssr25691

[Submit comment/correction]

Locus	scssr25691
Type	Microsatellite SNP
Synonym	Other name Ctig5103 Synonym ABC25691_L01R01
Chromosome	3H
Map	[ Hide all but 1 of 11 ] Barley, B73xCPI-3H 52.9 Barley-ConsensusFHB-3H 71.17 Hordeum-Consensus2005-SNP-3H 65.141 Hordeum-Consensus2007-SSR-3H 68.16 Hordeum-OWB-2005-3H 87.2 Hordeum-OWB-OPA2008-3H 82.689 Hordeum-OWB-SNP-3H 92.19 Hordeum-QTLConsensus-Abiotic-3H 65.14 Hordeum-QTLConsensus-Agronomic-3H 65.14 Hv-Integrated2009-3H 79.2 Hv-Nure/Tremois-3H 66.8
	[ Show Nearby Loci ]
Map Data	Barley, Abiotic QTL Consensus [ Show all 11 ]
Species	Hordeum vulgare
Probe	ABC25691_L01R01 scssr25691
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Ramsay L et al. (2004) Variation shown by molecular markers in barley: genomic and genetic contraints Aspects of Applied Biology 72:146-154.
Data Source	Russell, Joanne
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' [ Show all 6 ]
Probe for Locus	ABC25691_L01R01
Locus	scssr25691
Data at Germinate	ABC25691
Data at PLEXdb	Barley1_25691
General Remarks	Estimated product size = 219 BarleySNP type = Contig Indel Technology platform used = Radioisotope Labelled PCR Separation Affymetrix contig name = abc25691
PCR primers	5' ACGAGCTGATATCCCACGAG 5' TCCGAGCTTCTTATCTTTGG
Sequence	Barley1_25691
Source Species	Hordeum vulgare