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GrainGenes Marker Report: scssr18005

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Locus	scssr18005
Type	Microsatellite SNP
Synonym	Other name Ctig4700 Synonym ABC18005_L01R01
Chromosome	4H
Map	Barley-ConsensusFHB-4H 68.5 [ Show all 8 ]
	[ Show Nearby Loci ]
Map Data	Barley, Abiotic QTL Consensus [ Show all 8 ]
Species	Hordeum vulgare
Probe	ABC18005_L01R01 scssr18005
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Ramsay L et al. (2004) Variation shown by molecular markers in barley: genomic and genetic contraints Aspects of Applied Biology 72:146-154.
Data Source	Russell, Joanne
Remark	[ Hide all but 1 of 6 ] Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : OWBrecessive x OWBdominant Insert contains repeat (GA)11 Polymorphic Information Content (PIC) = 0.25 Developing laboratory = SCRI (R. Waugh)
Probe for Locus	ABC18005_L01R01
Locus	scssr18005
Data at Germinate	ABC18005
General Remarks	Estimated product size = 176 BarleySNP type = Contig Indel Technology platform used = Radioisotope Labelled PCR Separation Affymetrix contig name = abc18005
PCR primers	5' TCCTCACACAGAGAGAAGTGC 5' CCCACACGGTGTAGTAGAGG
Source Species	Hordeum vulgare