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GrainGenes Marker Report: scssr07970

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Locus
scssr07970
Type
Microsatellite
SNP
Synonym
Other nameCtig12865
SynonymABC07970_L01R01
Chromosome
7H
Map
Barley-ConsensusFHB-7H58.2
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Map Data
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Barley, Abiotic QTL Consensus
Barley, Agronomic QTL Consensus
Barley, Consensus 2005, SNP
Barley, Consensus 2007, SSR
Barley, Consensus 2023, FHB
Barley, Integrated, Marcel 2009
Barley, OWB, 2005
Barley, OWB, SNP
Species
Hordeum vulgare
Probe
ABC07970_L01R01
scssr07970
Reference
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceRamsay L et al. (2004) Variation shown by molecular markers in barley: genomic and genetic contraints Aspects of Applied Biology 72:146-154.
Data Source
Russell, Joanne
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys
Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : OWBrecessive x OWBdominant
Polymorphic Information Content (PIC) = 0.69
Developing laboratory = SCRI (R. Waugh)


Probe for Locus
ABC07970_L01R01
Locus
scssr07970
Data at Germinate
ABC07970
General Remarks
Estimated product size = 160
BarleySNP type = Contig Indel
Technology platform used = Radioisotope Labelled PCR Separation
Affymetrix contig name = abc07970
PCR primers
5' TGCATTGGGAGTGCTAGG
5' TGCAAGAAGCCAAGAATACC
Source Species
Hordeum vulgare