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GrainGenes Marker Report: scssr05939

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Locus	scssr05939
Type	Microsatellite SNP
Synonym	Other name Ctig4437 Synonym ABC05939_L01R01
Chromosome	5H
Map	Barley, B73xCPI-5H 86.5 [ Show all 9 ]
	[ Show Nearby Loci ]
Map Data	[ Hide all but 1 of 9 ] Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, B73xCPI Barley, Consensus 2005, SNP Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, Integrated, Marcel 2009 Barley, OWB, 2005 Barley, OWB, SNP
Species	Hordeum vulgare
Probe	ABC05939_L01R01 scssr05939
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Ramsay L et al. (2004) Variation shown by molecular markers in barley: genomic and genetic contraints Aspects of Applied Biology 72:146-154.
Data Source	Russell, Joanne
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' [ Show all 6 ]
Probe for Locus	ABC05939_L01R01
Locus	scssr05939
Data at Germinate	ABC05939
Data at PLEXdb	Barley1_05939
General Remarks	Estimated product size = 158 BarleySNP type = Contig Indel Technology platform used = Radioisotope Labelled PCR Separation Affymetrix contig name = abc05939
PCR primers	5' TCATTGGGCTCTTCTACGG 5' GCAAACCGGACTAAGTATGC
Sequence	Barley1_05939
Source Species	Hordeum vulgare