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GrainGenes Marker Report: scssr02306
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Locus
scssr02306

Type
Microsatellite
SNP

Synonym
Other name Ctig8095
Synonym ABC02306_L01R01

Chromosome
5H

Map
[ Hide all but 1 of 11 ]
Barley, B73xCPI-5H 7.3
Barley-ConsensusFHB-5H 21.13
Hordeum-Consensus2005-SNP-5H 0
Hordeum-Consensus2007-SSR-5H 6.13
Hordeum-OWB-2005-5H 0
Hordeum-OWB-OPA2008-5H 14.506
Hordeum-OWB-SNP-5H 54.28
Hordeum-QTLConsensus-Abiotic-5H 0
Hordeum-QTLConsensus-Agronomic-5H 0
Hv-Integrated2009-5H 7.5
Hv-Nure/Tremois-5H 7.6

[ Show Nearby Loci ]

Map Data
Barley, Abiotic QTL Consensus

[ Show all 11 ]

Species
Hordeum vulgare

Probe
ABC02306_L01R01
scssr02306

Reference

Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.

Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.

Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.

Ramsay L et al. (2004) Variation shown by molecular markers in barley: genomic and genetic contraints Aspects of Applied Biology 72:146-154.

Data Source
Russell, Joanne

Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'

[ Show all 6 ]

Probe for Locus
ABC02306_L01R01

Locus
scssr02306

Data at Germinate
ABC02306

Data at PLEXdb
Barley1_02306

General Remarks
Estimated product size = 123
BarleySNP type = Contig Indel
Technology platform used = Radioisotope Labelled PCR Separation
Affymetrix contig name = abc02306

PCR primers
5' TGCCTTGTTTATGTAATATCTTGTG
5' GGCGTAAATAAGAGTGTCTTCAG

Sequence
Barley1_02306

Source Species
Hordeum vulgare