GrainGenes Marker Report: k11405
Locus
k11405
Type
CAPS
Chromosome
5H
Map
Hv-HNxH602-5H 272.9
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
kr29D0107
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = XspI SNP = C/G SNP structure (UNICODE) = TGCTCGAGCTSTAGGGTATTT Parent 1 SNP sequence = TGCTCGAGCTCTAGGGTATTT Parent 2 SNP sequence = TGCTCGAGCTGTAGGGTATTT Recognized sequence for CAPs locus = CTAG
Probe for Locus
kr29D0107
Locus
k11405
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = OSJNBa0020P07.3 [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - TTCCTCGTCAATTTTGCTCA
Right 5' - TGCTGAGGGACTATCAACGTC
Sequence
AV942120
PCR size
366
GrainGenes Marker Report: k11405
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