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GrainGenes Marker Report: k11388

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Locus	k11388
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 288.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	kr32C1105
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = C/G SNP structure (UNICODE) = TATACACATASGAGTAGGATT Parent 1 SNP sequence = TATACACATACGAGTAGGATT Parent 2 SNP sequence = TATACACATAGGAGTAGGATT SNP structure (UNICODE) = TTGTGGTTGTSGTTGTAGGTA Parent 1 SNP sequence = TTGTGGTTGTCGTTGTAGGTA Parent 2 SNP sequence = TTGTGGTTGTGGTTGTAGGTA SNP = T/C SNP structure (UNICODE) = ACTTTCTTTCYTTCTTTCTTT Parent 1 SNP sequence = ACTTTCTTTCTTTCTTTCTTT Parent 2 SNP sequence = ACTTTCTTTCCTTCTTTCTTT
Probe for Locus	kr32C1105
Locus	k11388
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative glutathione S-transferase OsGSTT1 [Oryza sativa subsp. japonica]
Type	PCR
PCR primers	Left 5' - CTCGGACAGTGTGGTGAATG Right 5' - CGGCCTGGTAGTGATGGTAT
Sequence	BM442869
PCR size	370