Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k11145

[Submit comment/correction]

Locus	k11145
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 288.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	kr30B1103
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = C/T SNP structure (UNICODE) = TCCCACCAGGYATCGCTCCCT Parent 1 SNP sequence = TCCCACCAGGCATCGCTCCCT Parent 2 SNP sequence = TCCCACCAGGTATCGCTCCCT SNP = C/A SNP structure (UNICODE) = TTCCCAACTTMTAATTTGCAT Parent 1 SNP sequence = TTCCCAACTTCTAATTTGCAT Parent 2 SNP sequence = TTCCCAACTTATAATTTGCAT SNP = T/G SNP structure (UNICODE) = CTGCAATGTCKTTGCACCACC Parent 1 SNP sequence = CTGCAATGTCTTTGCACCACC Parent 2 SNP sequence = CTGCAATGTCGTTGCACCACC SNP = A/T SNP structure (UNICODE) = AGGTCTATGTWATCTTTGTTT Parent 1 SNP sequence = AGGTCTATGTAATCTTTGTTT Parent 2 SNP sequence = AGGTCTATGTTATCTTTGTTT
Probe for Locus	kr30B1103
Locus	k11145
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative 60S ribosomal protein L38 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCAGATCCAGCAGCCTAAAG Right 5' - AAGTTCGCCGACGAGAAGT
Sequence	BM375368
PCR size	261