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GrainGenes Marker Report: k10825

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Locus	k10825
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 275
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bastl32H0816
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = C/T SNP structure (UNICODE) = CGCACCCAGAYGCGAGATGCC Parent 1 SNP sequence = CGCACCCAGACGCGAGATGCC Parent 2 SNP sequence = CGCACCCAGATGCGAGATGCC SNP = T/C SNP structure (UNICODE) = GTGCTGCCACYCAAGGCTAGC Parent 1 SNP sequence = GTGCTGCCACTCAAGGCTAGC Parent 2 SNP sequence = GTGCTGCCACCCAAGGCTAGC SNP = G/A SNP structure (UNICODE) = GCCAGCAAAGRTTAGATACAT Parent 1 SNP sequence = GCCAGCAAAGGTTAGATACAT Parent 2 SNP sequence = GCCAGCAAAGATTAGATACAT
Probe for Locus	bastl32H0816
Locus	k10825
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative serine/threonine kinase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATGCATAAATCATGGCAGCA Right 5' - GCCACGCTCCACTGATAACT
Sequence	BF065166
PCR size	332