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GrainGenes Marker Report: k10244

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Locus	k10244
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 188.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bast46F0711
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = G/A SNP structure (UNICODE) = ATAACCCTACRACTCAGAAGG Parent 1 SNP sequence = ATAACCCTACGACTCAGAAGG Parent 2 SNP sequence = ATAACCCTACAACTCAGAAGG SNP = A/T SNP structure (UNICODE) = GCCGACCCCGWTACTAGCACG Parent 1 SNP sequence = GCCGACCCCGATACTAGCACG Parent 2 SNP sequence = GCCGACCCCGTTACTAGCACG SNP = A/C SNP structure (UNICODE) = GAGAGCAGGAMATATCTATCA Parent 1 SNP sequence = GAGAGCAGGAAATATCTATCA Parent 2 SNP sequence = GAGAGCAGGACATATCTATCA SNP = T/C SNP structure (UNICODE) = ATCTATCATTYCAGGCCAAAT Parent 1 SNP sequence = ATCTATCATTTCAGGCCAAAT Parent 2 SNP sequence = ATCTATCATTCCAGGCCAAAT
Probe for Locus	bast46F0711
Locus	k10244
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0079A21.14 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACGGTAGCACCACATCTTCC Right 5' - GGCTATGGAAGCCCATGATA
Sequence	BQ662934
PCR size	283