Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k10238

[Submit comment/correction]

Locus	k10238
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 22.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bast55B1204
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 14 ] SNP = C/G SNP structure (UNICODE) = TCTACTCCTASTTTGTTTTTA Parent 1 SNP sequence = TCTACTCCTACTTTGTTTTTA Parent 2 SNP sequence = TCTACTCCTAGTTTGTTTTTA SNP = T/C SNP structure (UNICODE) = ACCTTGGCAAYGATGTCCTCC Parent 1 SNP sequence = ACCTTGGCAATGATGTCCTCC Parent 2 SNP sequence = ACCTTGGCAACGATGTCCTCC SNP structure (UNICODE) = GATAACAATGYCAGTTCAGTT Parent 1 SNP sequence = GATAACAATGTCAGTTCAGTT Parent 2 SNP sequence = GATAACAATGCCAGTTCAGTT SNP structure (UNICODE) = GTGAATTCTGYCCAAAGATGC Parent 1 SNP sequence = GTGAATTCTGTCCAAAGATGC Parent 2 SNP sequence = GTGAATTCTGCCCAAAGATGC
Probe for Locus	bast55B1204
Locus	k10238
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative ammonium transporter [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACAGTGACACACCCCAAACA Right 5' - CATGCGCTGAAGAGAAATCA
Sequence	BQ767396
PCR size	270