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GrainGenes Marker Report: k10154

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Locus	k10154
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 102.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bast27E1010
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/G SNP structure (UNICODE) = TACCTTTCGCRAGGCGGAGCG Parent 1 SNP sequence = TACCTTTCGCAAGGCGGAGCG Parent 2 SNP sequence = TACCTTTCGCGAGGCGGAGCG SNP = G/C SNP structure (UNICODE) = TACTGGTCATSAGGCGGGAGC Parent 1 SNP sequence = TACTGGTCATGAGGCGGGAGC Parent 2 SNP sequence = TACTGGTCATCAGGCGGGAGC
Probe for Locus	bast27E1010
Locus	k10154
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative RNA helicase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TTGCTCGCAACATACGACTC Right 5' - GCAAAAGAAGCCCAATACCA
Sequence	AJ433349
PCR size	213