Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k10012

[Submit comment/correction]

Locus	k10012
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 117.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bast62E0610
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = HhaI SNP = T/C SNP structure (UNICODE) = CATGAGTGCGYTGTGTCCTGA Parent 1 SNP sequence = CATGAGTGCGTTGTGTCCTGA Parent 2 SNP sequence = CATGAGTGCGCTGTGTCCTGA Recognized sequence for CAPs locus = GCGC SNP = A/G SNP structure (UNICODE) = NCANGACACARCGCANNNNRG Parent 1 SNP sequence = TCANGACACAACGCACCNNAG Parent 2 SNP sequence = NCANGACACAGCGCANNGGGG
Probe for Locus	bast62E0610
Locus	k10012
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = aleurain (EC 3.4.22.-) precursor - barley
Type	PCR
PCR primers	Left 5' - TCCGAGCACACGAACACTAC Right 5' - CGACTAATGAGGGAAGGCAG
Sequence	BJ547125
PCR size	321