Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k09982

[Submit comment/correction]

Locus	k09982
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 123.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bast21B1204
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = G/A SNP structure (UNICODE) = CACTACTAAGRTAGATATAGC Parent 1 SNP sequence = CACTACTAAGGTAGATATAGC Parent 2 SNP sequence = CACTACTAAGATAGATATAGC SNP = A/G SNP structure (UNICODE) = ACCGAACAAGRTGCATGCACA Parent 1 SNP sequence = ACCGAACAAGATGCATGCACA Parent 2 SNP sequence = ACCGAACAAGGTGCATGCACA
Probe for Locus	bast21B1204
Locus	k09982
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = allene oxide synthase [Hordeum vulgare subsp. vulgare]
Type	PCR
PCR primers	Left 5' - GGGCATGCGTGCTATACTTT Right 5' - TACGTGTTCAACAACGGCAC
Sequence	BU983281
PCR size	377