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GrainGenes Marker Report: k09971

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Locus	k09971
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 34.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bast75H0616
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = C/A SNP structure (UNICODE) = ATATATTTTCMAAGCAAGAGG Parent 1 SNP sequence = ATATATTTTCCAAGCAAGAGG Parent 2 SNP sequence = ATATATTTTCAAAGCAAGAGG SNP = G/A SNP structure (UNICODE) = TGGCGGTTGGRGGCAACCAGT Parent 1 SNP sequence = TGGCGGTTGGGGGCAACCAGT Parent 2 SNP sequence = TGGCGGTTGGAGGCAACCAGT
Probe for Locus	bast75H0616
Locus	k09971
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = bHLH transcription factor, putative [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AAGAAACCGACCGACAACTG Right 5' - CTGAGCTAACTGAGCTGCCA
Sequence	BQ659136
PCR size	393