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GrainGenes Marker Report: k09929

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Locus	k09929
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 215.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD15P23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BanI SNP = G/T SNP structure (UNICODE) = GTGTCCCTCCKGTGCCTTCTC Parent 1 SNP sequence = GTGTCCCTCCGGTGCCTTCTC Parent 2 SNP sequence = GTGTCCCTCCTGTGCCTTCTC Recognized sequence for CAPs locus = GGYRCC
Probe for Locus	BaSD15P23
Locus	k09929
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = contains similarity to unknown protein~dbj BAA90946.1~gene_id:K7J8.7 [Arabidopsis
Type	PCR
PCR primers	Left 5' - GATCATGCATCGTTGAGCC Right 5' - CCCTACATCTGCATGGACCT
Sequence	AV928870
PCR size	354