Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k09850

[Submit comment/correction]

Locus	k09850
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 109.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD16G03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = T/G SNP structure (UNICODE) = AAAATATTGCKCAGCTTTAAA Parent 1 SNP sequence = AAAATATTGCTCAGCTTTAAA Parent 2 SNP sequence = AAAATATTGCGCAGCTTTAAA Recognized sequence for CAPs locus = GCGC
Probe for Locus	BaSD16G03
Locus	k09850
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative HD domain protein [Oryza sativa (japonica cultivar-group)] gb AAL59028.1 putative HD domain protein [Oryza sativa]
Type	PCR
PCR primers	Left 5' - GCGCTGAGAGGAAGAAGAAG Right 5' - TGAAGTGAGGCCTGGAGAAC
Sequence	AV929739
PCR size	360