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GrainGenes Marker Report: k09581

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Locus	k09581
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 187.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD23P08
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HaeIII SNP = G/A SNP structure (UNICODE) = TCGTCATGTTRGCCCTCTGCA Parent 1 SNP sequence = TCGTCATGTTGGCCCTCTGCA Parent 2 SNP sequence = TCGTCATGTTAGCCCTCTGCA Recognized sequence for CAPs locus = GGCC
Probe for Locus	BaSD23P08
Locus	k09581
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = leucine-rich repeat transmembrane protein kinase 1 - maize (fragment)
Type	PCR
PCR primers	Left 5' - ATCACACAGACCAGATGGCA Right 5' - AAGGACCTAGACCTGCGGAT
PCR size	372