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GrainGenes Marker Report: k09533

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Locus	k09533
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 326.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD18L13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AfaI SNP = A/G SNP structure (UNICODE) = CCGCTCCTCCRTACGATGATG Parent 1 SNP sequence = CCGCTCCTCCATACGATGATG Parent 2 SNP sequence = CCGCTCCTCCGTACGATGATG Recognized sequence for CAPs locus = GTAC
Probe for Locus	BaSD18L13
Locus	k09533
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = SMC3 protein [Oryza sativa]
Type	PCR
PCR primers	Left 5' - CATCTCCTCTGCCTAACAAGC Right 5' - TACAGGAACAGGAAGGTGGC
Sequence	AV931145
PCR size	397