Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k09403

[Submit comment/correction]

Locus	k09403
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 213.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH16P10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = G/C SNP structure (UNICODE) = CATTCATCAGSGAATGCACAG Parent 1 SNP sequence = CATTCATCAGGGAATGCACAG Parent 2 SNP sequence = CATTCATCAGCGAATGCACAG SNP = G/T SNP structure (UNICODE) = TGTGTCACCCKCAACCTCCAG Parent 1 SNP sequence = TGTGTCACCCGCAACCTCCAG Parent 2 SNP sequence = TGTGTCACCCTCAACCTCCAG
Probe for Locus	BaH16P10
Locus	k09403
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = B1078G07.36 [Oryza sativa (japonica cultivar-group)] dbj BAB90214.1 B1078G07.36 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TCATCACGACACACACACAGA Right 5' - GGCAAAACATGTTCCCAGAT
Sequence	AV943337
PCR size	367