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GrainGenes Marker Report: k09387

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Locus	k09387
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 104.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH42D07
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = G/A SNP structure (UNICODE) = AGAGGTGAAGRACACCGGACG Parent 1 SNP sequence = AGAGGTGAAGGACACCGGACG Parent 2 SNP sequence = AGAGGTGAAGAACACCGGACG SNP structure (UNICODE) = AGCTACCACARAAGTCCTTTC Parent 1 SNP sequence = AGCTACCACAGAAGTCCTTTC Parent 2 SNP sequence = AGCTACCACAAAAGTCCTTTC SNP = G/C SNP structure (UNICODE) = CCCATGTCTGSACAACAAAAG Parent 1 SNP sequence = CCCATGTCTGGACAACAAAAG Parent 2 SNP sequence = CCCATGTCTGCACAACAAAAG
Probe for Locus	BaH42D07
Locus	k09387
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = nitrilase-like protein [imported] - rice dbj BAA77679.1 nitrilase-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CCCACCCGTTGTTCACTACT Right 5' - AGTCCAGATTTGCATGGGAC
Sequence	BJ482946
PCR size	363