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GrainGenes Marker Report: k09336

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Locus
k09336
Type
SNP
Chromosome
3H
Map
Hv-HNxH602-3H70.8
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare
Hordeum vulgare subsp. spontaneum
Probe
BaSD24D11
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 27 ]
SNP = G/C
SNP structure (UNICODE) = ATATTTGCATSATATCAAGGT
Parent 1 SNP sequence = ATATTTGCATGATATCAAGGT
Parent 2 SNP sequence = ATATTTGCATCATATCAAGGT
SNP = T/A
SNP structure (UNICODE) = CGGTCAAGGCWATGAGATGCC
Parent 1 SNP sequence = CGGTCAAGGCTATGAGATGCC
Parent 2 SNP sequence = CGGTCAAGGCAATGAGATGCC
SNP = T/C
SNP structure (UNICODE) = CGAGGTGTTAYACTTCATAGC
Parent 1 SNP sequence = CGAGGTGTTATACTTCATAGC
Parent 2 SNP sequence = CGAGGTGTTACACTTCATAGC
SNP = A/C
SNP structure (UNICODE) = CTTTTCTGACMAAGCGCATGT
Parent 1 SNP sequence = CTTTTCTGACAAAGCGCATGT
Parent 2 SNP sequence = CTTTTCTGACCAAGCGCATGT
SNP structure (UNICODE) = GCACGCTTCAMAAGATTAACG
Parent 1 SNP sequence = GCACGCTTCAAAAGATTAACG
Parent 2 SNP sequence = GCACGCTTCACAAGATTAACG
SNP = C/G
SNP structure (UNICODE) = GTGGTGTTGCSGCAGACTGCG
Parent 1 SNP sequence = GTGGTGTTGCCGCAGACTGCG
Parent 2 SNP sequence = GTGGTGTTGCGGCAGACTGCG
SNP = G/A
SNP structure (UNICODE) = GGCAGGAAACRGAACATTGAG
Parent 1 SNP sequence = GGCAGGAAACGGAACATTGAG
Parent 2 SNP sequence = GGCAGGAAACAGAACATTGAG


Probe for Locus
BaSD24D11
Locus
k09336
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = putative CER3 [Oryza sativa (japonica cultivar-group)] dbj BAB43991.1 putative CER3 [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - AGTTTCCTCGCCATACAACG
Right 5' - GAAGCTTTGGGCAAATACGA
Sequence
AV837020
PCR size
167