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GrainGenes Marker Report: k09307

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Locus	k09307
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 141.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH50N04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = C/T SNP structure (UNICODE) = GAGCGGCGCGYGGTACGGTGG Parent 1 SNP sequence = GAGCGGCGCGCGGTACGGTGG Parent 2 SNP sequence = GAGCGGCGCGTGGTACGGTGG SNP = T/C SNP structure (UNICODE) = GTACGTAGCTYGCTTGGTCGC Parent 1 SNP sequence = GTACGTAGCTTGCTTGGTCGC Parent 2 SNP sequence = GTACGTAGCTCGCTTGGTCGC
Probe for Locus	BaH50N04
Locus	k09307
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0036B21.24 [Oryza sativa (japonica cultivar-group)] emb CAE01532.1 OSJNBa0072F16.1 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGATCTTCGAGGAATCCACC Right 5' - AGTACAACGGGATTTGCCTG
Sequence	AV939512
PCR size	446