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GrainGenes Marker Report: k09282

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Locus	k09282
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 161
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH49L06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = ClaI SNP = C/T SNP structure (UNICODE) = TTAGGATCGAYGAGCACCGGG Parent 1 SNP sequence = TTAGGATCGACGAGCACCGGG Parent 2 SNP sequence = TTAGGATCGATGAGCACCGGG Recognized sequence for CAPs locus = ATCGAT
Probe for Locus	BaH49L06
Locus	k09282
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - GCTCCCTACTAAACAGGCCC Right 5' - GAGCCCTGGAGACCATGATA
Sequence	AV919871
PCR size	439