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GrainGenes Marker Report: k09225

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Locus	k09225
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 304.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH29L05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = G/A SNP structure (UNICODE) = GATTTCTTGARTTGTAATCCG Parent 1 SNP sequence = GATTTCTTGAGTTGTAATCCG Parent 2 SNP sequence = GATTTCTTGAATTGTAATCCG SNP = C/A SNP structure (UNICODE) = GCAACATCCGMCTAGATTTCT Parent 1 SNP sequence = GCAACATCCGCCTAGATTTCT Parent 2 SNP sequence = GCAACATCCGACTAGATTTCT SNP = A/G SNP structure (UNICODE) = TGTAGTCCCCRTGCAACTTCC Parent 1 SNP sequence = TGTAGTCCCCATGCAACTTCC Parent 2 SNP sequence = TGTAGTCCCCGTGCAACTTCC SNP structure (UNICODE) = TTTTATTAAARAAATAGAAAT Parent 1 SNP sequence = TTTTATTAAAGAAATAGAAAT Parent 2 SNP sequence = TTTTATTAAAAAAATAGAAAT
Probe for Locus	BaH29L05
Locus	k09225
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative subtilase [Oryza sativa (japonica cultivar-group)] dbj BAB89883.1 putative subtilase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AAAGGGAGATTGGACGACTG Right 5' - TTTTGGCGACCAGTTCTTCT
Sequence	AV836022
PCR size	413