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GrainGenes Marker Report: k08978

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Locus	k08978
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 288.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH42J22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = A/G SNP structure (UNICODE) = ATTTGGCCAGRCGAACAACCG Parent 1 SNP sequence = ATTTGGCCAGACGAACAACCG Parent 2 SNP sequence = ATTTGGCCAGGCGAACAACCG SNP = G/A SNP structure (UNICODE) = CGCCCCTCTCRACTGCATCCC Parent 1 SNP sequence = CGCCCCTCTCGACTGCATCCC Parent 2 SNP sequence = CGCCCCTCTCAACTGCATCCC SNP = T/G SNP structure (UNICODE) = TCATGTGTTTKCCTATGATCC Parent 1 SNP sequence = TCATGTGTTTTCCTATGATCC Parent 2 SNP sequence = TCATGTGTTTGCCTATGATCC
Probe for Locus	BaH42J22
Locus	k08978
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = chlorophyll b synthase [Oryza sativa]
Type	PCR
PCR primers	Left 5' - TACATGAGCAGCCAGGTGAA Right 5' - TGGACAGGGAAGACGTAAGG
Sequence	AV927635
PCR size	383