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GrainGenes Marker Report: k08949

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Locus	k08949
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 196.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH37N04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = A/G SNP structure (UNICODE) = GAGATAATGTRAACGCTAGAA Parent 1 SNP sequence = GAGATAATGTAAACGCTAGAA Parent 2 SNP sequence = GAGATAATGTGAACGCTAGAA SNP = T/A SNP structure (UNICODE) = TGTGACCCAGWAAGAAGGGGC Parent 1 SNP sequence = TGTGACCCAGTAAGAAGGGGC Parent 2 SNP sequence = TGTGACCCAGAAAGAAGGGGC SNP = C/T SNP structure (UNICODE) = ATTGTTGCATYAGTAAAAAGA Parent 1 SNP sequence = ATTGTTGCATCAGTAAAAAGA Parent 2 SNP sequence = ATTGTTGCATTAGTAAAAAGA SNP = G/A SNP structure (UNICODE) = GTACAACAGCRAAAAGTTAAC Parent 1 SNP sequence = GTACAACAGCGAAAAGTTAAC Parent 2 SNP sequence = GTACAACAGCAAAAAGTTAAC
Probe for Locus	BaH37N04
Locus	k08949
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] gb AAM14059.1 unknown protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CATCATGGATTCATGGAGCA Right 5' - CGGGAAGGTGATGAAGAAGA
PCR size	379