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GrainGenes Marker Report: k08820

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Locus	k08820
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 326.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH32B01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = C/T SNP structure (UNICODE) = ATCACAACTGYGCTACTTTTT Parent 1 SNP sequence = ATCACAACTGCGCTACTTTTT Parent 2 SNP sequence = ATCACAACTGTGCTACTTTTT Recognized sequence for CAPs locus = GCGC
Probe for Locus	BaH32B01
Locus	k08820
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TTGCTTGTCCGAGTCTTCCT Right 5' - ATTTGTAGAAGCAAGGCGGA
Sequence	BJ486257
PCR size	277