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GrainGenes Marker Report: k08810

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Locus	k08810
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 221.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH15M10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BspT104I SNP = A/G SNP structure (UNICODE) = TCTCACATTCRAAGATTGTAG Parent 1 SNP sequence = TCTCACATTCAAAGATTGTAG Parent 2 SNP sequence = TCTCACATTCGAAGATTGTAG Recognized sequence for CAPs locus = TTCGAA
Probe for Locus	BaH15M10
Locus	k08810
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = At2g5740/F3N11.19 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - GGGAACTCAAGATGCGAGAC Right 5' - ACAGGGACAAGGACAACCAG
Sequence	AV943099
PCR size	254