GrainGenes Marker Report: k08736
Locus
k08736
Type
CAPS
Chromosome
7H
Map
Hv-HNxH602-7H 120.2
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
BaH54E07
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HindIII SNP = G/A SNP structure (UNICODE) = GGCAGTACACRAGCTTCCGAG Parent 1 SNP sequence = GGCAGTACACGAGCTTCCGAG Parent 2 SNP sequence = GGCAGTACACAAGCTTCCGAG Recognized sequence for CAPs locus = AAGCTT
Probe for Locus
BaH54E07
Locus
k08736
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = putative NADH dehydrogenase [Arabidopsis thaliana]
Type
PCR
PCR primers
Left 5' - ATCCATCCATCCACCAACAT
Right 5' - GAAACAGGCCGTAGACAAGG
Sequence
BJ485172
PCR size
348
GrainGenes Marker Report: k08736
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