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GrainGenes Marker Report: k08722

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Locus	k08722
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 80.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH33A16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MseI SNP = A/T SNP structure (UNICODE) = ATGCAACTCTWAACACAAAAT Parent 1 SNP sequence = ATGCAACTCTAAACACAAAAT Parent 2 SNP sequence = ATGCAACTCTTAACACAAAAT Recognized sequence for CAPs locus = TTAA
Probe for Locus	BaH33A16
Locus	k08722
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] gb AAL62409.1 unknown protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AACATTCGGTAGATGGCAGC Right 5' - GTGGCAAGTATGGCCTTGTT
Sequence	AV946425
PCR size	322