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GrainGenes Marker Report: k08719

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Locus	k08719
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 251.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH28B09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 21 ] SNP = A/G SNP structure (UNICODE) = CAACAAATACRAAAGTGAGTT Parent 1 SNP sequence = CAACAAATACAAAAGTGAGTT Parent 2 SNP sequence = CAACAAATACGAAAGTGAGTT SNP = G/A SNP structure (UNICODE) = AATCGGCCGGRGACCATCAGA Parent 1 SNP sequence = AATCGGCCGGGGACCATCAGA Parent 2 SNP sequence = AATCGGCCGGAGACCATCAGA SNP structure (UNICODE) = ACGATGCAGCRGACACAAGCT Parent 1 SNP sequence = ACGATGCAGCGGACACAAGCT Parent 2 SNP sequence = ACGATGCAGCAGACACAAGCT SNP = T/A SNP structure (UNICODE) = TTGTCTTTTAWAATAAGCATT Parent 1 SNP sequence = TTGTCTTTTATAATAAGCATT Parent 2 SNP sequence = TTGTCTTTTAAAATAAGCATT SNP structure (UNICODE) = TTTTATTGACRGTGCAAAACA Parent 1 SNP sequence = TTTTATTGACGGTGCAAAACA Parent 2 SNP sequence = TTTTATTGACAGTGCAAAACA SNP structure (UNICODE) = AAACTCTGACRTGGGATAGAA Parent 1 SNP sequence = AAACTCTGACGTGGGATAGAA Parent 2 SNP sequence = AAACTCTGACATGGGATAGAA
Probe for Locus	BaH28B09
Locus	k08719
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative lipoic acid synthase-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AAGCAGAGCTAACAGCGAGC Right 5' - CGACCAGACATACAGCGAGA
Sequence	AV835987
PCR size	305