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GrainGenes Marker Report: k08658

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Locus	k08658
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 358
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH45O03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = G/A SNP structure (UNICODE) = CTGCTCAAGCRCTGTGTGAAA Parent 1 SNP sequence = CTGCTCAAGCGCTGTGTGAAA Parent 2 SNP sequence = CTGCTCAAGCACTGTGTGAAA Recognized sequence for CAPs locus = GCGC
Probe for Locus	BaH45O03
Locus	k08658
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative myrosinase precursor [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TACACCATGCCACCATCATC Right 5' - CTGCAGAACATGCACAGGAT
Sequence	BJ483545
PCR size	351