Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k08649

[Submit comment/correction]

Locus	k08649
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 75.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH50J14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 13 ] SNP = T/C SNP structure (UNICODE) = CAAGGCTTTGYTAGGTACTAC Parent 1 SNP sequence = CAAGGCTTTGTTAGGTACTAC Parent 2 SNP sequence = CAAGGCTTTGCTAGGTACTAC SNP structure (UNICODE) = CCAAGATGCAYGGTCTACTTC Parent 1 SNP sequence = CCAAGATGCATGGTCTACTTC Parent 2 SNP sequence = CCAAGATGCACGGTCTACTTC SNP structure (UNICODE) = TATCATTTCAYAACCCAAGAT Parent 1 SNP sequence = TATCATTTCATAACCCAAGAT Parent 2 SNP sequence = TATCATTTCACAACCCAAGAT SNP structure (UNICODE) = AGCTCATGGTYGAAGCCGCGA Parent 1 SNP sequence = AGCTCATGGTTGAAGCCGCGA Parent 2 SNP sequence = AGCTCATGGTCGAAGCCGCGA
Probe for Locus	BaH50J14
Locus	k08649
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0518C01.3 [Oryza sativa (japonica cultivar-group)] dbj BAB63667.1 P0518C01.3 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CAGAACCAGGAAACGGAAAA Right 5' - TGGCACGTTGTACAGCAGAT
Sequence	AV932540
PCR size	352