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GrainGenes Marker Report: k08594

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Locus	k08594
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 154.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH36P06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = A/G SNP structure (UNICODE) = CATCTCCGGCRGTCTCAACAG Parent 1 SNP sequence = CATCTCCGGCAGTCTCAACAG Parent 2 SNP sequence = CATCTCCGGCGGTCTCAACAG SNP = G/A SNP structure (UNICODE) = GATATGAATCRGGAGTTGTTG Parent 1 SNP sequence = GATATGAATCGGGAGTTGTTG Parent 2 SNP sequence = GATATGAATCAGGAGTTGTTG SNP = C/T SNP structure (UNICODE) = TGTTTCTTTTYGATTAAATCA Parent 1 SNP sequence = TGTTTCTTTTCGATTAAATCA Parent 2 SNP sequence = TGTTTCTTTTTGATTAAATCA SNP structure (UNICODE) = GTACCATCCGRGCAAGAATCG Parent 1 SNP sequence = GTACCATCCGGGCAAGAATCG Parent 2 SNP sequence = GTACCATCCGAGCAAGAATCG
Probe for Locus	BaH36P06
Locus	k08594
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = CG13719-PA [Drosophila melanogaster] gb AAF47919.1 CG13719-PA [Drosophila melanogaster]
Type	PCR
PCR primers	Left 5' - TAACACGTTGTCTCGCTTGG Right 5' - CATTATCAACATGGTCGGCA
Sequence	AV946943
PCR size	350