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GrainGenes Marker Report: k08567

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Locus	k08567
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 99.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH57E12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = DdeI SNP = C/A SNP structure (UNICODE) = AATGCCTCGAMTTAGTTATGA Parent 1 SNP sequence = AATGCCTCGACTTAGTTATGA Parent 2 SNP sequence = AATGCCTCGAATTAGTTATGA Recognized sequence for CAPs locus = CTNAG
Probe for Locus	BaH57E12
Locus	k08567
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative protein kinase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGTACCAGGATCCGGCTTAT Right 5' - CATCCGTCAACAGAATTCCC
Sequence	BJ485520
PCR size	360