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GrainGenes Marker Report: k08560

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Locus	k08560
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 116.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH29I03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = KpnI SNP = C/T SNP structure (UNICODE) = TGCAAGGTACYATCCCAGGAT Parent 1 SNP sequence = TGCAAGGTACCATCCCAGGAT Parent 2 SNP sequence = TGCAAGGTACTATCCCAGGAT Recognized sequence for CAPs locus = GGTACC
Probe for Locus	BaH29I03
Locus	k08560
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0456F08.26 [Oryza sativa (japonica cultivar-group)] dbj BAB39426.1 P0456F08.26 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AGCAAAGCCAGAAATGGAGA Right 5' - CTGACCCTGCAATTCACAGA
Sequence	CA011396
PCR size	356