Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k08554

[Submit comment/correction]

Locus	k08554
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 102.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH27N11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = NcoI SNP = G/T SNP structure (UNICODE) = ACTAACCATGKAAAAGGCTTA Parent 1 SNP sequence = ACTAACCATGGAAAAGGCTTA Parent 2 SNP sequence = ACTAACCATGTAAAAGGCTTA Recognized sequence for CAPs locus = CCATGG
Probe for Locus	BaH27N11
Locus	k08554
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Phosphoenolpyruvate carboxylase 1 (PEPCase 1) (CP21) pir S31159 phosphoenolpyruvate carboxylase (EC 4.1.1.31) CP21 - sorghum
Type	PCR
PCR primers	Left 5' - GCAGCACATAGGAATCGACA Right 5' - TGACCTCGGAAATGTGACAG
Sequence	AV835979
PCR size	360