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GrainGenes Marker Report: k08543

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Locus	k08543
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 203.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH51J22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = C/T SNP structure (UNICODE) = GCCCAGACGTYCCCCAACACG Parent 1 SNP sequence = GCCCAGACGTCCCCCAACACG Parent 2 SNP sequence = GCCCAGACGTTCCCCAACACG SNP = G/A SNP structure (UNICODE) = TTTTATCTGGRGAAGGATAAA Parent 1 SNP sequence = TTTTATCTGGGGAAGGATAAA Parent 2 SNP sequence = TTTTATCTGGAGAAGGATAAA SNP = A/G SNP structure (UNICODE) = CTGAGCTGAARGTGCAGCAGC Parent 1 SNP sequence = CTGAGCTGAAAGTGCAGCAGC Parent 2 SNP sequence = CTGAGCTGAAGGTGCAGCAGC SNP = A/C SNP structure (UNICODE) = GTTCCTTGGTMGTCAATCGTC Parent 1 SNP sequence = GTTCCTTGGTAGTCAATCGTC Parent 2 SNP sequence = GTTCCTTGGTCGTCAATCGTC
Probe for Locus	BaH51J22
Locus	k08543
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative antifreeze glycoprotein precursor [Oryza sativa]
Type	PCR
PCR primers	Left 5' - ATAGCGAACAAAGCGGACAC Right 5' - TGGTTGGTCGGTCGTTTACT
Sequence	BJ552269
PCR size	360