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GrainGenes Marker Report: k08534

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Locus	k08534
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 133.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH13D11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = A/G SNP structure (UNICODE) = GAAATCCTTCRGCATAGTTTG Parent 1 SNP sequence = GAAATCCTTCAGCATAGTTTG Parent 2 SNP sequence = GAAATCCTTCGGCATAGTTTG SNP = A/C SNP structure (UNICODE) = GTCTCAGACAMGGTACTTCCA Parent 1 SNP sequence = GTCTCAGACAAGGTACTTCCA Parent 2 SNP sequence = GTCTCAGACACGGTACTTCCA SNP = C/A SNP structure (UNICODE) = ACAGTACACAMCGACTGAATA Parent 1 SNP sequence = ACAGTACACACCGACTGAATA Parent 2 SNP sequence = ACAGTACACAACGACTGAATA SNP structure (UNICODE) = ATAGAAGCACRATTGTTGAGA Parent 1 SNP sequence = ATAGAAGCACAATTGTTGAGA Parent 2 SNP sequence = ATAGAAGCACGATTGTTGAGA
Probe for Locus	BaH13D11
Locus	k08534
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative eukaryotic peptide chain release factor subunit 1-3 (eRF1-3) [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCAAACATAAGGAACCCCCT Right 5' - GGAGTGACGACGATTGTGTG
Sequence	AV918056
PCR size	355