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GrainGenes Marker Report: k08529

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Locus	k08529
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 281.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH26M05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BstUI SNP = A/G SNP structure (UNICODE) = GTGCTGTCGCRAGCATGACCG Parent 1 SNP sequence = GTGCTGTCGCAAGCATGACCG Parent 2 SNP sequence = GTGCTGTCGCGAGCATGACCG Recognized sequence for CAPs locus = CGCG
Probe for Locus	BaH26M05
Locus	k08529
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = ubiquitin-conjugating enzyme family protein [Arabidopsis thaliana] gb AAL66989.1 putative E2, ubiquitin-conjugating enzyme [Arabidopsis tha
Type	PCR
PCR primers	Left 5' - CATCTTGCCATCCTCGTGTA Right 5' - GCAGCAAGAAAAAGGACGAC
Sequence	AV945474
PCR size	359