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GrainGenes Marker Report: k08509

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Locus	k08509
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 32.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH17D02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = BsmAI SNP = A/G SNP structure (UNICODE) = CATGACCACCRTCTCGTGCCG Parent 1 SNP sequence = CATGACCACCATCTCGTGCCG Parent 2 SNP sequence = CATGACCACCGTCTCGTGCCG Recognized sequence for CAPs locus = NNNNNGAGAC SNP = C/G SNP structure (UNICODE) = TGCATCATCCSTGACTACTTC Parent 1 SNP sequence = TGCATCATCCCTGACTACTTC Parent 2 SNP sequence = TGCATCATCCGTGACTACTTC
Probe for Locus	BaH17D02
Locus	k08509
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = GTPase activator protein-like [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATTTGATGAAGTTGCTCCGC Right 5' - AGATGAGGTCTCGTGATCGG
Sequence	AV835711
PCR size	354