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GrainGenes Marker Report: k08490

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Locus	k08490
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 81.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS4J14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = C/T SNP structure (UNICODE) = GGACTTCATGYGCCACTCCAG Parent 1 SNP sequence = GGACTTCATGCGCCACTCCAG Parent 2 SNP sequence = GGACTTCATGTGCCACTCCAG Recognized sequence for CAPs locus = GCGC
Probe for Locus	BaGS4J14
Locus	k08490
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative carboxymethylenebutenolidase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AAATCCGTCGACGACAAGAC Right 5' - AAGGTCTCCAAGCTCACCAA
Sequence	AV919119
PCR size	356