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GrainGenes Marker Report: k08483

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Locus	k08483
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 114.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS27M04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HinfI SNP = G/A SNP structure (UNICODE) = CTTGCGTACARAATCTTGTTG Parent 1 SNP sequence = CTTGCGTACAGAATCTTGTTG Parent 2 SNP sequence = CTTGCGTACAAAATCTTGTTG Recognized sequence for CAPs locus = GANTC
Probe for Locus	BaGS27M04
Locus	k08483
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = constitutive photomorphogenic 11 [Oryza sativa subsp. indica]
Type	PCR
PCR primers	Left 5' - CATACTCGTGTGCCACCATC Right 5' - TTAACTGCATCTGCACCACC
Sequence	BJ465888
PCR size	359