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GrainGenes Marker Report: k08467

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Locus	k08467
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 186.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS15J07
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = DraIII SNP = C/G SNP structure (UNICODE) = CATTTTGCCASACATAGTGAG Parent 1 SNP sequence = CATTTTGCCACACATAGTGAG Parent 2 SNP sequence = CATTTTGCCAGACATAGTGAG Recognized sequence for CAPs locus = CACNNNGTG
Probe for Locus	BaGS15J07
Locus	k08467
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = 26S proteasome regulatory particle triple-A ATPase subunit4b [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TTCGGAAAGACTATCCCTGG Right 5' - CAGCAGACCCAGTCTTCCTC
Sequence	BU983180
PCR size	357