Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k08436

[Submit comment/correction]

Locus	k08436
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 79.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS4J04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MboI SNP = A/G SNP structure (UNICODE) = GGAAACAGCARATCAAGTACA Parent 1 SNP sequence = GGAAACAGCAAATCAAGTACA Parent 2 SNP sequence = GGAAACAGCAGATCAAGTACA Recognized sequence for CAPs locus = GATC
Probe for Locus	BaGS4J04
Locus	k08436
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = 26S proteasome regulatory subunit 4 homolog(Tat binding protein homolog 2) [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACAACACATGGGACGACAGA Right 5' - TGATAACGACCCAAATGCTG
Sequence	AV919111
PCR size	359